About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32201770_32204449_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32201770 - 32204449
Intron Length:
2680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATAAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTTTATAAAA
Flanking Amino Acid:
GPECGWCAQEDFMADGTQKG
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
71.3
40.1
Major BPS
78.6
0.71
1
78.6
31
Major PPT
71.7
0.49
1
67.8
41.2
Minor 5ss
38.5
-1.3
3.4
55.3
48.9
Minor BPS
55.9
0.18
1.7
68.75
37.7

Associated Gene:

Gene:
ITGB8
Ensembl Gene ID:
ENSAPLG00000007741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046070
32187868 - 32234630
46763
ENSAPLT00000008050
32187868 - 32227037
39170