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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32204625_32207257_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32204625 - 32207257
Intron Length:
2633

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGGTTA
5'SS Class:
major
3'SS Sequence:
TCCTTTGAATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTCCTTTGAAT
Flanking Amino Acid:
PAKVSVQLRPGSEANFILKV
Intron Amino Acid Position:
130

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.2
67.8
39.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
69.9
0.45
1
70.1
39.3
Minor 5ss
35.3
-1.7
3.5
46.9
48.5
Minor BPS
70.2
0.72
1.4
85.92
33.5

Associated Gene:

Gene:
ITGB8
Ensembl Gene ID:
ENSAPLG00000007741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046070
32187868 - 32234630
46763
ENSAPLT00000031906
32204450 - 32251773
47324
ENSAPLT00000008050
32187868 - 32227037
39170