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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32207505_32208397_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32207505 - 32208397
Intron Length:
893

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAATC
Flanking Amino Acid:
IHPGRIHNQCSDYNLDCMPP
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
88.7
25.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
79.2
0.66
0.9
75.8
38.1
Minor 5ss
43.5
-0.7
2.6
59.2
45.4
Minor BPS
71.7
0.66
1.6
81.43
33.4

Associated Gene:

Gene:
ITGB8
Ensembl Gene ID:
ENSAPLG00000007741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046070
32187868 - 32234630
46763
ENSAPLT00000031906
32204450 - 32251773
47324
ENSAPLT00000008050
32187868 - 32227037
39170