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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32211450_32216386_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32211450 - 32216386
Intron Length:
4937

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
TTCTGTTGTATT
Flanking Amino Acid:
DNVYVKATSMEHPSLGQLSE
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
77.4
33.3
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
81.7
0.71
0.8
77.5
36.5
Minor 5ss
38.5
-1.3
3.4
52.2
46
Minor BPS
45.7
-0.2
2.1
67.82
43.6

Associated Gene:

Gene:
ITGB8
Ensembl Gene ID:
ENSAPLG00000007741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046070
32187868 - 32234630
46763
ENSAPLT00000031906
32204450 - 32251773
47324
ENSAPLT00000008050
32187868 - 32227037
39170