About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32216666_32219257_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32216666 - 32219257
Intron Length:
2592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTGGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
TTTCTGGTTACA
Flanking Amino Acid:
LNDLVVEAYQKLISEVKIQV
Intron Amino Acid Position:
383

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
73.1
31.9
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
82.1
0.72
0.9
75.8
38.2
Minor 5ss
44.3
-0.6
2.8
57.2
47.1
Minor BPS
41.7
-0.6
2.7
64.02
42.2

Associated Gene:

Gene:
ITGB8
Ensembl Gene ID:
ENSAPLG00000007741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008050
32187868 - 32227037
39170
ENSAPLT00000046070
32187868 - 32234630
46763
ENSAPLT00000031906
32204450 - 32251773
47324