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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32219393_32222279_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32219393 - 32222279
Intron Length:
2887

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTATGTTTA
5'SS Class:
major
3'SS Sequence:
TATTTCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATGAT
U12 Branch Point Sequence:
ATATCTGTATTT
Flanking Amino Acid:
GCKNVGYNEEVLFNVSVTMK
Intron Amino Acid Position:
428

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
79.5
29.4
Major BPS
76.8
0.67
1
66
40.9
Major PPT
82.2
0.72
0.7
81.6
30
Minor 5ss
55.6
0.19
2.3
66.5
39
Minor BPS
48.4
-0
2.2
70.65
41

Associated Gene:

Gene:
ITGB8
Ensembl Gene ID:
ENSAPLG00000007741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046070
32187868 - 32234630
46763
ENSAPLT00000031906
32204450 - 32251773
47324
ENSAPLT00000008050
32187868 - 32227037
39170