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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32222686_32224248_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32222686 - 32224248
Intron Length:
1563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTGATGTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATGACTCAAGA
Flanking Amino Acid:
CPYHQGNLCSGNGECEAGKC
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.5
41.1
Major BPS
100
1.24
0.5
100
0
Major PPT
71.5
0.48
1
65.4
40.7
Minor 5ss
45.7
-0.5
2.9
61.8
44.9
Minor BPS
47.1
-0.2
2.1
61.9
43.8

Associated Gene:

Gene:
ITGB8
Ensembl Gene ID:
ENSAPLG00000007741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046070
32187868 - 32234630
46763
ENSAPLT00000031906
32204450 - 32251773
47324
ENSAPLT00000008050
32187868 - 32227037
39170