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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32224475_32225474_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32224475 - 32225474
Intron Length:
1000

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACGTCTC
5'SS Class:
major
3'SS Sequence:
TTCTCTTTCATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTCTTTCATA
Flanking Amino Acid:
PACNKACEENWNCVQCHHSN
Intron Amino Acid Position:
638

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
69
41.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
83
0.74
0.7
79.6
26
Minor 5ss
37.9
-1.4
3.2
49.8
41
Minor BPS
64.2
0.44
1.7
74.34
38.4

Associated Gene:

Gene:
ITGB8
Ensembl Gene ID:
ENSAPLG00000007741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046070
32187868 - 32234630
46763
ENSAPLT00000031906
32204450 - 32251773
47324
ENSAPLT00000008050
32187868 - 32227037
39170