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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32234308_32234576_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32234308 - 32234576
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAGGTGCA
5'SS Class:
major
3'SS Sequence:
GTTCTCCTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAT
U12 Branch Point Sequence:
GAGGAGTTAATG
Flanking Amino Acid:
DFSHFFDTSHVYNKDKNLGN
Intron Amino Acid Position:
770

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.1
68
37.2
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
78.6
0.64
0.8
70.3
36.4
Minor 5ss
34
-1.8
3.5
45.1
43.2
Minor BPS
41.6
-0.7
2.2
41.89
43

Associated Gene:

Gene:
ITGB8
Ensembl Gene ID:
ENSAPLG00000007741
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046070
32187868 - 32234630
46763