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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32306949_32307549_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
32306949 - 32307549
Intron Length:
601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAAAAGG
5'SS Class:
major
3'SS Sequence:
ATTGTTCAGAAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
ATTTTCACATCT
Flanking Amino Acid:
DEATSALDTETLDNARQGRT
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1
58.6
40.4
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
55.1
0.11
1.2
57.1
42.3
Minor 5ss
28.5
-2.5
2.9
31.2
36.4
Minor BPS
48.8
-0
2
75.5
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027277
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030706
32306684 - 32307734
1051