Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32330280_32332580_F

Intron Information:

Intron Rank:

146533

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

32330280 - 32332580

Intron Length:

2301

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATTATGA

5'SS Class:

major

3'SS Sequence:

TCTGCAAAACCAG|T

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCAAAA

U12 Branch Point Sequence:

CTCTGCAAAACC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.2

0.52

63.2

37.6

Major BPS

52.9

0.07

1.1

59.3

35.9

Major PPT

0.18

1.1

49.6

42.1

Minor 5ss

43.5

-0.7

2.8

47.1

Minor BPS

44.6

-0.4

2.3

58.68

46.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028954

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045625

32330133 - 32337791

7659

ENSAPLT00000017292

32330133 - 32357174

27042