About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32334061_32357079_F

Intron Information:

Intron Rank:
146535
Intron Class:
major
Intron Phase:
Intron Coordinates:
32334061 - 32357079
Intron Length:
23019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTTTA
5'SS Class:
major
3'SS Sequence:
GGTTTCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
ATGTATTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
77.1
34.2
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.2
0.63
0.9
70
41.4
Minor 5ss
42.8
-0.8
3
58.7
45.7
Minor BPS
59.5
0.3
1.6
68.04
38

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028954
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017292
32330133 - 32357174
27042