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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32387248_32387582_F

Intron Information:

Intron Rank:
132240
Intron Class:
major
Intron Phase:
Intron Coordinates:
32387248 - 32387582
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
TTTATTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
66.1
40.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.7
0.89
0.7
84.3
30.6
Minor 5ss
28.4
-2.5
3.5
38.3
46.7
Minor BPS
57.3
0.09
1.8
65.06
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021044
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019021
32386586 - 32387857
1272