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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32551450_32568738_F

Intron Information:

Intron Rank:
149168
Intron Class:
major
Intron Phase:
Intron Coordinates:
32551450 - 32568738
Intron Length:
17289

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
80
0.75
1
78.6
31
Major PPT
73.6
0.53
0.9
68.6
37.3
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
47.7
-0
2
68.54
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030208
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018505
32551093 - 32569784
18692