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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32554400_32568738_F

Intron Information:

Intron Rank:
149172
Intron Class:
major
Intron Phase:
Intron Coordinates:
32554400 - 32568738
Intron Length:
14339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATTGAT
5'SS Class:
strong_major
3'SS Sequence:
GTGTCTTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATAATAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
79.4
28.6
Major BPS
80
0.75
1
78.6
31
Major PPT
73.6
0.53
0.9
68.6
37.3
Minor 5ss
29
-2.4
3.2
40.2
45.9
Minor BPS
47.7
-0
2
68.54
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030208
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025463
32553852 - 32569784
15933