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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32615293_32615807_F

Intron Information:

Intron Rank:
136291
Intron Class:
major
Intron Phase:
Intron Coordinates:
32615293 - 32615807
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGCATT
5'SS Class:
strong_major
3'SS Sequence:
GATTTTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
GATTCAGTCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
83.5
35.1
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
85.4
0.8
0.8
77.2
41.6
Minor 5ss
55
0.17
2.5
74.6
41.7
Minor BPS
43.7
-0.4
2.5
67
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023431
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032195
32614947 - 32616400
1454
ENSAPLT00000025148
32613216 - 32616400
3185