About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32634718_32638966_R

Intron Information:

Intron Rank:
135916
Intron Class:
major
Intron Phase:
Intron Coordinates:
32634718 - 32638966
Intron Length:
4249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
ATGATTTTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
CATTTCATACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79.5
0.66
0.9
73.5
41.1
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
50
-0
1.9
64.82
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020543
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045093
32634011 - 32639442
5432