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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32646902_32647529_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32646902 - 32647529
Intron Length:
628

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAA
U12 Branch Point Sequence:
TTACGCTTGATA
Flanking Amino Acid:
MSDQKKEETMPT
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.4
35.9
Major BPS
67.7
0.44
1
58.3
38.4
Major PPT
92.2
0.95
0.6
88.3
21.3
Minor 5ss
42.6
-0.8
2.6
54.6
42.8
Minor BPS
56.5
0.2
1.8
68.51
37.8

Associated Gene:

Gene:
SP4
Ensembl Gene ID:
ENSAPLG00000010528
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010956
32646895 - 32668490
21596