Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32649672_32666458_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32649672 - 32666458

Intron Length:

16787

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGAGTGGT

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTTTTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTAAA

U12 Branch Point Sequence:

TCTTGTTTTACA

Flanking Amino Acid:

GVPVTITSVAGQQQGQDGVK

Intron Amino Acid Position:

556

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.4

0.98

0.8

81.3

32.8

Major BPS

66.4

0.41

1.1

67.7

36.5

Major PPT

88.7

0.87

0.7

83.2

31.9

Minor 5ss

-2.4

3.2

40.6

45.6

Minor BPS

0.15

2.1

70.62

41.9

Associated Gene:

Gene:

SP4

Ensembl Gene ID:

ENSAPLG00000010528

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030982

32647238 - 32668490

21253

ENSAPLT00000010956

32646895 - 32668490

21596