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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32696659_32703282_F

Intron Information:

Intron Rank:
139658
Intron Class:
major
Intron Phase:
Intron Coordinates:
32696659 - 32703282
Intron Length:
6624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTATCTGTACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
31.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.2
0.81
0.8
84.1
30.8
Minor 5ss
33.1
-1.9
3.1
38.4
40.8
Minor BPS
50.2
0.09
2.2
75.99
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025067
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043327
32696190 - 32705178
8989