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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32704980_32705554_F

Intron Information:

Intron Rank:
139654
Intron Class:
major
Intron Phase:
Intron Coordinates:
32704980 - 32705554
Intron Length:
575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTATAACTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
84.6
33.2
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
91.2
0.93
0.7
84.6
36
Minor 5ss
42.9
-0.8
2.9
57
41.2
Minor BPS
46.8
-0.3
2.1
59.7
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025067
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031033
32704824 - 32713459
8636