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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32705678_32706075_F

Intron Information:

Intron Rank:
139655
Intron Class:
major
Intron Phase:
Intron Coordinates:
32705678 - 32706075
Intron Length:
398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTGCAT
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
0.9
75.3
32.6
Major BPS
51
0.03
1.5
63.1
44.4
Major PPT
84.7
0.78
0.8
77.7
36.7
Minor 5ss
34.8
-1.7
3.5
49.1
41
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025067
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031033
32704824 - 32713459
8636