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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32706301_32708555_F

Intron Information:

Intron Rank:
139656
Intron Class:
major
Intron Phase:
Intron Coordinates:
32706301 - 32708555
Intron Length:
2255

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TGTTTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
ATACCATTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
71.7
40.1
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
90.7
0.92
0.7
88.9
28.1
Minor 5ss
36.4
-1.5
2.7
38.9
40.3
Minor BPS
56.8
0.21
1.7
67.59
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025067
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031033
32704824 - 32713459
8636