About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32769329_32770252_F

Intron Information:

Intron Rank:
142335
Intron Class:
major
Intron Phase:
Intron Coordinates:
32769329 - 32770252
Intron Length:
924

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAGAAA
U12 Branch Point Sequence:
CTTTCTGTGATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.4
0.98
0.8
80.8
33.7
Major BPS
53.7
0.09
1.4
64.3
39.6
Major PPT
91.3
0.93
0.7
89.4
26.5
Minor 5ss
32.8
-2
2.9
40.7
45.1
Minor BPS
53.5
0.09
2
68.56
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026653
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029814
32761094 - 32770316
9223