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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32777856_32782765_F

Intron Information:

Intron Rank:
149223
Intron Class:
major
Intron Phase:
Intron Coordinates:
32777856 - 32782765
Intron Length:
4910

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTATGTCCT
5'SS Class:
major
3'SS Sequence:
TATTCTTTCTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTATTCTTATAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.7
0.42
1.1
62.1
42.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
81.8
0.72
0.7
81.3
30.3
Minor 5ss
45.1
-0.5
2.8
65.5
39.3
Minor BPS
64.6
0.54
1.7
81.89
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030236
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018888
32777418 - 32785790
8373