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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32810296_32811151_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32810296 - 32811151
Intron Length:
856

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
CCAACTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TCCTTTCCAACT
Flanking Amino Acid:
VKDKIYDKVLGSTCHQCRQK
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.7
38.4
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
68.8
0.42
0.9
65.7
35.6
Minor 5ss
37.9
-1.4
2.7
47.5
36
Minor BPS
48.6
-0
1.9
67.83
43.5

Associated Gene:

Gene:
CDCA7L
Ensembl Gene ID:
ENSAPLG00000011101
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026269
32808862 - 32823683
14822
ENSAPLT00000011579
32809553 - 32829275
19723