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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32814905_32822988_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32814905 - 32822988
Intron Length:
8084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
GGTATTTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTTCTCATACCT
Flanking Amino Acid:
MWHLLTSKLGVQYQPRYLT
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
78.7
29.8
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
79.3
0.66
0.9
72.3
42.5
Minor 5ss
36.9
-1.5
2.7
44
38.6
Minor BPS
57.1
0.3
1.9
82.09
39.1

Associated Gene:

Gene:
CDCA7L
Ensembl Gene ID:
ENSAPLG00000011101
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026269
32808862 - 32823683
14822