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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32880144_32883050_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32880144 - 32883050
Intron Length:
2907

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTGTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
AGCTCTCTGATT
Flanking Amino Acid:
SLRHCRNNQFGNEVPSKEHH
Intron Amino Acid Position:
532

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
79.8
35.3
Major BPS
79
0.72
1
69
38.9
Major PPT
75.1
0.56
0.8
69.6
31.2
Minor 5ss
35.2
-1.7
2.7
39.5
40.9
Minor BPS
50.5
0.1
1.6
66.35
38.7

Associated Gene:

Gene:
RAPGEF5
Ensembl Gene ID:
ENSAPLG00000011214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011723
32879849 - 32940071
60223