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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32883106_32888586_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32883106 - 32888586
Intron Length:
5481

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
CCTGTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
GATGTTTTATCT
Flanking Amino Acid:
LDNLVNFEKLHMIADTVRSL
Intron Amino Acid Position:
514

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
82.1
0.72
0.8
76.1
32.4
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
53
0.17
1.7
68.98
42.2

Associated Gene:

Gene:
RAPGEF5
Ensembl Gene ID:
ENSAPLG00000011214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011723
32879849 - 32940071
60223