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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32898493_32899743_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32898493 - 32899743
Intron Length:
1251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGC
5'SS Class:
strong_major
3'SS Sequence:
CAATGTCTTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTATCCCTAATA
Flanking Amino Acid:
DWSLFNAIHEQELIYFTFSR
Intron Amino Acid Position:
356

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
73
38.2
Major BPS
80
0.75
1
78.6
31
Major PPT
72.3
0.5
1
62
43.9
Minor 5ss
27.2
-2.6
3
33.9
41.8
Minor BPS
66
0.5
1.7
74.21
37

Associated Gene:

Gene:
RAPGEF5
Ensembl Gene ID:
ENSAPLG00000011214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011723
32879849 - 32940071
60223