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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32899867_32901605_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32899867 - 32901605
Intron Length:
1739

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGATG
5'SS Class:
strong_major
3'SS Sequence:
GTCAATTATTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAA
U12 Branch Point Sequence:
TTCTTGTCAATT
Flanking Amino Acid:
VYRKDLTDSLNPFAENEELQ
Intron Amino Acid Position:
315

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
75.2
40.6
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
65.5
0.35
1
62.6
43
Minor 5ss
36
-1.6
3.3
45.6
43.8
Minor BPS
50.7
0.1
2.2
75.15
42.4

Associated Gene:

Gene:
RAPGEF5
Ensembl Gene ID:
ENSAPLG00000011214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011723
32879849 - 32940071
60223