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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32901704_32904329_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32901704 - 32904329
Intron Length:
2626

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATACC
5'SS Class:
major
3'SS Sequence:
TCTATTTTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TTTTTCTGAAGC
Flanking Amino Acid:
LALVTVTFSGEKHELQPNDL
Intron Amino Acid Position:
282

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
73.9
34.6
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
77
0.61
1
78
34.1
Minor 5ss
36.5
-1.5
2.8
43.6
37.8
Minor BPS
65.9
0.48
1.7
78.77
36.7

Associated Gene:

Gene:
RAPGEF5
Ensembl Gene ID:
ENSAPLG00000011214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011723
32879849 - 32940071
60223