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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32907494_32908443_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32907494 - 32908443
Intron Length:
950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACAA
5'SS Class:
major
3'SS Sequence:
CACTCCCTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCCAC
U12 Branch Point Sequence:
TCCTCCCCCACT
Flanking Amino Acid:
TVDEYSPHRKNKTFFHQFSL
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.2
67.8
39.3
Major BPS
45
-0.3
1.2
49.7
35.3
Major PPT
71.6
0.49
0.8
64.4
30.6
Minor 5ss
36.8
-1.5
3.1
47.7
47.7
Minor BPS
46.6
-0.1
2.3
68.62
47.8

Associated Gene:

Gene:
RAPGEF5
Ensembl Gene ID:
ENSAPLG00000011214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011723
32879849 - 32940071
60223