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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32909309_32910521_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32909309 - 32910521
Intron Length:
1213

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTGAAA
5'SS Class:
major
3'SS Sequence:
TTTTATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ACTATTTTATTT
Flanking Amino Acid:
EDEHLKQFLKTIYRNVLDDV
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1
69.4
36.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
88.7
0.87
0.7
85.2
29.2
Minor 5ss
37.7
-1.4
3.1
48.2
47.6
Minor BPS
51
0.11
1.6
65.86
39.8

Associated Gene:

Gene:
RAPGEF5
Ensembl Gene ID:
ENSAPLG00000011214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011723
32879849 - 32940071
60223