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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32910667_32911752_R

Intron Information:

Intron Rank:
2
Intron Class:
minor
Intron Phase:
2
Intron Coordinates:
32910667 - 32911752
Intron Length:
1086

Sequence Information:

Terminal Dinucleotides:
AT-AC
5'SS Sequence:
GCA|ATATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TAACCTACTGTAC|C
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
TTAGTAT
U12 Branch Point Sequence:
TTTCCCTTAACC
Flanking Amino Acid:
TDDLCQALLRHYCAKNYQGK
Intron Amino Acid Position:
114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
31
-1.1
3.3
47.3
43.8
Major BPS
59.8
0.24
1.5
60.1
46.3
Major PPT
38.6
-0.6
3.1
52.3
37.3
Minor 5ss
98
1.6
0.7
93.5
17.1
Minor BPS
89.2
1.21
0.9
92.56
25.2

Associated Gene:

Gene:
RAPGEF5
Ensembl Gene ID:
ENSAPLG00000011214
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011723
32879849 - 32940071
60223