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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_32951038_32970839_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32951038 - 32970839
Intron Length:
19802

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGACAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTACTCAAAT
Flanking Amino Acid:
DRKQPEKTEQLMNSRACLFF
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
74.4
35.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
75.3
0.57
0.9
71.7
32.9
Minor 5ss
35.3
-1.7
3.3
48.7
41.3
Minor BPS
65.2
0.56
1.8
87.24
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029004
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042700
32950864 - 33040142
89279