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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33008237_33009229_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33008237 - 33009229
Intron Length:
993

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCCAA
5'SS Class:
major
3'SS Sequence:
TGTCTATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
TGCTACAGAAAT
Flanking Amino Acid:
KDRVYLTGICRRSCVGSELV
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1.2
65
42.7
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
84.2
0.77
0.8
81.4
35.2
Minor 5ss
42.7
-0.8
3
56.1
48
Minor BPS
45.6
-0.2
2
65.58
43.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029004
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042700
32950864 - 33040142
89279