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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33010478_33039932_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33010478 - 33039932
Intron Length:
29455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGCTGC
5'SS Class:
major
3'SS Sequence:
AACTTTCTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAA
U12 Branch Point Sequence:
ACTTTCTTACAG
Flanking Amino Acid:
RKSAAAAGHRTLSRRISNPY
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.3
0.57
1
60.1
41.9
Major BPS
68.7
0.47
0.9
67.9
25
Major PPT
79.7
0.67
0.9
72.9
36.5
Minor 5ss
38.3
-1.3
3
41.6
45.3
Minor BPS
52.4
-0
1.8
58.22
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029004
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042700
32950864 - 33040142
89279