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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_3305143_3307172_R

Intron Information:

Intron Rank:
136846
Intron Class:
major
Intron Phase:
Intron Coordinates:
3305143 - 3307172
Intron Length:
2030

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TATCTTTTGATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
65.4
0.35
1.1
61.1
44.7
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
61.5
0.35
1.1
67.62
32.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021121
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042436
3304007 - 3310583
6577