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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33140600_33143690_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33140600 - 33143690
Intron Length:
3091

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTCAGTGGC
5'SS Class:
major
3'SS Sequence:
TGTTTCACTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TAATGTTTATCT
Flanking Amino Acid:
WGFIPVVLYLGFKRGADPGM
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.3
72.7
38.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.9
0.72
0.8
78.9
34.3
Minor 5ss
28.4
-2.5
3
35.8
40.9
Minor BPS
53.6
0.19
2
73.76
43.1

Associated Gene:

Gene:
TOMM7
Ensembl Gene ID:
ENSAPLG00000028735
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040892
33140523 - 33143793
3271