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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33172864_33173725_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
33172864 - 33173725
Intron Length:
862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCGCTG
5'SS Class:
major
3'SS Sequence:
TCCTACCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CAAATGTTAATT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.2
0.36
1.3
55.4
48.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
67.7
0.4
0.9
61.3
33.8
Minor 5ss
38.8
-1.3
3.6
55.9
48.3
Minor BPS
47.7
-0.1
2.1
62
42.3

Associated Gene:

Gene:
FAM126A
Ensembl Gene ID:
ENSAPLG00000011766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027992
33172259 - 33192250
19992