About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33172864_33179486_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33172864 - 33179486
Intron Length:
6623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCCTACCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
CAAATGTTAATT
Flanking Amino Acid:
SIRGHRWKRHGNTDLGIEEE
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
84.4
0.85
1
84
34.5
Major PPT
67.7
0.4
0.9
61.3
33.8
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
47.7
-0.1
2.1
62
42.3

Associated Gene:

Gene:
FAM126A
Ensembl Gene ID:
ENSAPLG00000011766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012311
33172259 - 33192250
19992