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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33174021_33179486_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33174021 - 33179486
Intron Length:
5466

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTAATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATCC
Flanking Amino Acid:
SIRGHRWKRHEQPENGNDAT
Intron Amino Acid Position:
331

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
76.9
31.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.9
0.65
0.8
71.2
38.6
Minor 5ss
33.9
-1.8
2.9
40.8
39.5
Minor BPS
76.7
0.82
1.5
85.84
32.3

Associated Gene:

Gene:
FAM126A
Ensembl Gene ID:
ENSAPLG00000011766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027992
33172259 - 33192250
19992