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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33181105_33183029_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33181105 - 33183029
Intron Length:
1925

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTTCT
5'SS Class:
strong_major
3'SS Sequence:
ATGATTTCCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTACATTATCT
Flanking Amino Acid:
SLQSLCQICSRICVCGYPRQ
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
83.3
29
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
68.8
0.42
0.9
66.7
39.8
Minor 5ss
42.9
-0.8
2.8
60
44.3
Minor BPS
57.3
0.31
1.9
78.04
43.9

Associated Gene:

Gene:
FAM126A
Ensembl Gene ID:
ENSAPLG00000011766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012311
33172259 - 33192250
19992
ENSAPLT00000027992
33172259 - 33192250
19992