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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33183126_33183446_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33183126 - 33183446
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAATTG
5'SS Class:
strong_major
3'SS Sequence:
TTGTAAACTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAA
U12 Branch Point Sequence:
TTCTTGTAAACT
Flanking Amino Acid:
PQREMLTAQNRFEVLTFLLL
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
0.9
74.9
36.1
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
70.7
0.47
1
60.5
44.7
Minor 5ss
40.9
-1
3.2
55.7
48.5
Minor BPS
52.8
0.17
2.3
78.66
44.1

Associated Gene:

Gene:
FAM126A
Ensembl Gene ID:
ENSAPLG00000011766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012311
33172259 - 33192250
19992
ENSAPLT00000027992
33172259 - 33192250
19992