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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33185856_33189619_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33185856 - 33189619
Intron Length:
3764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTACTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTACTTATTA
Flanking Amino Acid:
YKVIQEPQSELLEPVCHQLF
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
78.8
0.65
0.9
75.4
38.8
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
67
0.53
1.7
80.36
35.6

Associated Gene:

Gene:
FAM126A
Ensembl Gene ID:
ENSAPLG00000011766
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012311
33172259 - 33192250
19992
ENSAPLT00000027992
33172259 - 33192250
19992