About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33230624_33233571_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33230624 - 33233571
Intron Length:
2948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACGCGC
5'SS Class:
major
3'SS Sequence:
TCCTTTGATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TTTCCTTTGATT
Flanking Amino Acid:
MGVMNCMRKQRTLCDVILMV
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.2
58.7
46.2
Major BPS
84
0.85
0.9
75
39.9
Major PPT
78
0.63
0.9
76.6
36.6
Minor 5ss
36.6
-1.5
3.3
51
45.6
Minor BPS
76
0.9
1.1
88.36
29.9

Associated Gene:

Gene:
KLHL7
Ensembl Gene ID:
ENSAPLG00000012105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012635
33230504 - 33252265
21762