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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33234694_33235858_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
33234694 - 33235858
Intron Length:
1165

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTTTG
5'SS Class:
major
3'SS Sequence:
TTCTGTTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
TTGGTGCTAACT
Flanking Amino Acid:
EQLVEFAYTARISVNSNNVQ
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
71.6
40.9
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
81.1
0.7
0.8
76.5
32.1
Minor 5ss
42.5
-0.8
3.1
57.9
46.8
Minor BPS
46.7
-0.1
2.4
71.62
45.5

Associated Gene:

Gene:
KLHL7
Ensembl Gene ID:
ENSAPLG00000012105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012635
33230504 - 33252265
21762