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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33235984_33238237_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
33235984 - 33238237
Intron Length:
2254

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATTTTTTCAATT
Flanking Amino Acid:
KEQVDASNCLGISVLAECLD
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
73.1
31.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
93
0.97
0.6
88.6
20.7
Minor 5ss
29.9
-2.3
3.3
35
42.5
Minor BPS
66.9
0.61
1.4
81.89
33.7

Associated Gene:

Gene:
KLHL7
Ensembl Gene ID:
ENSAPLG00000012105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012635
33230504 - 33252265
21762