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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_33242738_33247222_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
33242738 - 33247222
Intron Length:
4485

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATCGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTAATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TAGACATTACCT
Flanking Amino Acid:
PQSCRYFNPKDYSWTDIRCP
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
78.1
36.6
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
76.1
0.59
1
70.5
39
Minor 5ss
42.3
-0.8
3.5
64.6
46.7
Minor BPS
51.4
0.12
2
71.36
44.9

Associated Gene:

Gene:
KLHL7
Ensembl Gene ID:
ENSAPLG00000012105
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012635
33230504 - 33252265
21762